Given the growing importance of organic food production, there is a pressing need to understand the relative environmental impacts of organic and conventional farming methods. This study applies standards-based life cycle assessment to compare the cradle-to-farm gate greenhouse gas emissions of 12 crop products grown in California using both organic and conventional methods. In addition to analyzing steady-state scenarios in which the soil organic carbon stocks are at equilibrium, this study models a hypothetical scenario of converting each conventional farming system to a corresponding organic system and examines the impact of soil carbon sequestration during the transition. The results show that steady-state organic production has higher emissions per kilogram than conventional production in seven out of the 12 cases (10.6% higher overall, excluding one outlier). Transitional organic production performs better, generating lower emissions than conventional production in seven cases (17.7% lower overall) and 22.3% lower emissions than steady-state organic. The results demonstrate that converting additional cropland to organic production may offer significant GHG reduction opportunities over the next few decades by way of increasing the soil organic carbon stocks during the transition. Nonorganic systems could also improve their environmental performance by adopting management practices to increase soil organic carbon stocks.