Tropical soils are important sources and sinks of atmospheric methane (CH4) and major sources of oxides of nitrogen gases, nitrous oxide (N2O) and NOx (NO+NO2). These gases are present in the atmosphere in trace amounts and are important to atmospheric chemistry and earth's radiative balance. Although nitric oxide (NO) does not directly contribute to the greenhouse effect by absorbing infrared radiation, it contributes to climate forcing through its role in photochemistry of hydroxyl radicals and ozone (O3) and plays a key role in air quality issues. Agricultural soils are a primary source of anthropogenic trace gas emissions, and the tropics and subtropics contribute greatly, particularly since 51% of world soils are in these climate zones. The soil microbial processes responsible for the production and consumption of CH4 and production of N-oxides are the same in all parts of the globe, regardless of climate. Because of the ubiquitous nature of the basic enzymatic processes in the soil, the biological processes responsible for the production of NO, N2O and CH4, nitrification/denitrification and methanogenesis/methanotropy are discussed in general terms. Soil water content and nutrient availability are key controls for production, consumption and emission of these gases. Intensive studies of CH4 exchange in rice production systems made during the past decade reveal new insight. At the same time, there have been relatively few measurements of CH4, N2O or NOx fluxes in upland tropical crop production systems. There are even fewer studies in which simultaneous measurements of these gases are reported. Such measurements are necessary for determining total greenhouse gas emission budgets. While intensive agricultural systems are important global sources of N2O and CH4 recent studies are revealing that the impact of tropical land use change on trace gas emissions is not as great as first reports suggested. It is becoming apparent that although conversion of forests to grazing lands initially induces higher N-oxide emissions than observed from the primary forest, within a few years emissions of NO and N2O generally fall below those from the primary forest. On the other hand, CH4 oxidation is typically greatly reduced and grazing lands may even become net sources in situations where soil compaction from cattle traffic limits gas diffusion. Establishment of tree-based systems following slash-and-burn agriculture enhances N2O and NO emissions during and immediately following burning. These emissions soon decline to rates similar to those observed in secondary forest while CH4 consumption rates are slightly reduced. Conversion to intensive cropping systems, on the other hand, results in significant increases in N2O emissions, a loss of the CH4 sink, and a substantial increase in the global warming potential compared to the forest and tree-based systems. The increasing intensification of crop production in the tropics, in which N fertilization must increase for many crops to sustain production, will most certainly increase N-oxide emissions. The increase, however, may be on the same order as that expected in temperate crop production, thus smaller than some have predicted. In addition, increased attention to management of fertilizer and water may reduce trace gas emissions and simultaneously increase fertilizer use efficiency.
